HPGH student outputs

Papers published by students on the Hosts, Pathogens and Global Health PhD programme about work from their PhDs.

Two silouetted heads talking
A digest of papers based on work by our fantastic students.

Students from the programme are highlighted in bold on the author lists.

Sex-specific effects of early-life adversity on adult fitness in a wild mammal. Drake ED, Ravindran S, Bal X, Pemberton JM, Pilkington JG, et alProc Biol Sci. 2025 Mar;292(2043):20250192. doi: 10.1098/rspb.2025.0192. Epub 2025 Mar 26.
How useful is Nanopore adaptive sampling for sequencing Schistosoma mansoni miracidia? Lim RM, Arme TM, Arinaitwe M, Barungi A, Crellen T, et alWellcome Open Res. 2025 May 16;10:239. doi: 10.12688/wellcomeopenres.24094.1. eCollection 2025.
Identification of novel PfEMP1 variants containing domain cassettes 11, 15 and 8 that mediate the Plasmodium falciparum virulence-associated rosetting phenotype. McLean FE, Omondi BR, Diallo N, Otoboh S ... Lim R, e talPLoS Pathog. 2025 Jan 13;21(1):e1012434. doi: 10.1371/journal.ppat.1012434. eCollection 2025 Jan.
Plasmodium falciparum infection induces T cell tolerance that is associated with decreased disease severity upon re-infection.Muñoz Sandoval D, Bach FA, Ivens A, Harding AC, Smith NL, et alJ Exp Med. 2025 Jul 7;222(7):e20241667. doi: 10.1084/jem.20241667
A non-vesicular Argonaute protein is transmitted from nematode to mouse and is important for parasite survival. Neophytou K, Martínez-Ugalde I, Fenton T, Robertson E, Strachan LJ, et albioRxiv [Preprint]. 2025 Apr 1:2025.04.01.646544. doi: 10.1101/2025.04.01.646544.
Genomics reveals zoonotic and sustained human mpox spread in West Africa. Parker E, Omah IF, Djuicy DD, Magee A, Tomkins-Tinch CH, et alNature. 2025 Jul;643(8074):1343-1351. doi: 10.1038/s41586-025-09128-2. Epub 2025 May 19.
Deep sequencing of BCR heavy chain repertoires in myalgic encephalomyelitis/chronic fatigue syndrome. Ryback AA, Cowan GJM.Front Immunol. 2025 Feb 17;16:1489312. doi: 10.3389/fimmu.2025.1489312. eCollection 2025.
Moving beyond discovery science to a mechanistic understanding of human malaria.Spence PJ, Nahrendorf W, Bach FACurr Opin Microbiol. 2025 Jun;85:102610. doi: 10.1016/j.mib.2025.102610

Remarkable Evolutionary Rate Variations Among Lineages and Among Genome Compartments in Malaria Parasites of Mammals. Abu-Elmakarem H, MacLean OA, Venter F, Plenderleith LJ, Culleton RL, et alMol Biol Evol. 2024 Dec 6;41(12):msae243. doi: 10.1093/molbev/msae243.
Impact of COVID-19 on the neglected tropical diseases: a scoping review. Butala CB, Cave RNR, Fyfe J, Coleman PG, Yang GJ, Welburn SC.Infect Dis Poverty. 2024 Jul 29;13(1):55. doi: 10.1186/s40249-024-01223-2.
Dantu Blood Group Erythrocytes Form Large Plasmodium falciparum Rosettes Less Commonly. Carlier MSA, Nyamu W, Makale J, Williams TN, Rowe JA, et alAm J Trop Med Hyg. 2024 Jan 30;110(3):436-443. doi: 10.4269/ajtmh.23-0347. Print 2024 Mar 6.
A phylogenetics and variant calling pipeline to support SARS-CoV-2 genomic epidemiology in the UK. Colquhoun R, O'Toole Á, Hill V, McCrone JT, Yu X, et alVirus Evol. 2024 Oct 17;10(1):veae083. doi: 10.1093/ve/veae083. eCollection 2024.
DNA methylation rates scale with maximum lifespan across mammals. Crofts SJC, Latorre-Crespo E, Chandra T.Nat Aging. 2024 Jan;4(1):27-32. doi: 10.1038/s43587-023-00535-6. Epub 2023 Dec 4.
Probabilistic inference of epigenetic age acceleration from cellular dynamics. Dabrowski JK, Yang EJ, Crofts SJC, Hillary RF, Simpson DJ, etalNat Aging. 2024 Oct;4(10):1493-1507. doi: 10.1038/s43587-024-00700-5. Epub 2024 Sep 23.
SARS-CoV-2 lineage assignments using phylogenetic placement/UShER are superior to pangoLEARN machine-learning method. de Bernardi Schneider A, Su M, Hinrichs AS, Wang J,  … O'Toole Á, et alVirus Evol. 2024 Jan 11;10(1):vead085. doi: 10.1093/ve/vead085. eCollection 2024.
Emergence of the B.1.214.2 SARS-CoV-2 lineage with an Omicron-like spike insertion and a unique upper airway immune signature. Holtz A, Van Weyenbergh J, Hong SL, Cuypers L, O'Toole Á, et alBMC Infect Dis. 2024 Oct 10;24(1):1139. doi: 10.1186/s12879-024-09967-w.
A framework for automated scalable designation of viral pathogen lineages from genomic data. McBroome J, de Bernardi Schneider A, Roemer C, Wolfinger MT ... O'Toole AN, et alNat Microbiol. 2024 Feb;9(2):550-560. doi: 10.1038/s41564-023-01587-5. Epub 2024 Feb 5.
Detection of naturally acquired, strain-transcending antibodies against rosetting Plasmodium falciparum strains in humans.McLean FE, Azasi Y, Sutherland C, Toboh E, Ansong D, et alInfect Immun. 2024 Jul 11;92(7):e0001524. doi: 10.1128/iai.00015-24. Epub 2024 Jun 6.
Publication-ready single nucleotide polymorphism visualization with snipit. O'Toole Á, Aziz A, Maloney D.Bioinformatics. 2024 Aug 2;40(8):btae510. doi: 10.1093/bioinformatics/btae510.
Automated detection and classification of polioviruses from nanopore sequencing reads using piranha. O'Toole Á, Colquhoun R, Ansley C, Troman C, Maloney D, et alVirus Evol. 2024 Feb 29;10(1):veae023. doi: 10.1093/ve/veae023. eCollection 2024.
Mechanisms of life cycle simplification in African trypanosomes. Oldrieve GR, Venter F, Cayla M, Verney M, Hébert L, et alNat Commun. 2024 Dec 2;15(1):10485. doi: 10.1038/s41467-024-54555-w.
Virulence is associated with daily rhythms in the within-host replication of the malaria parasite Plasmodium chabaudi. Owolabi ATY, Schneider P, Reece SE.Evol Appl. 2024 May 8;17(5):e13696. doi: 10.1111/eva.13696. eCollection 2024 May.
Genomic epidemiology uncovers the timing and origin of the emergence of mpox in humans. Parker E, Omah IF, Varilly P, Magee A, Ayinla AO, et almedRxiv [Preprint]. 2024 Jun 19:2024.06.18.24309104. doi: 10.1101/2024.06.18.24309104.
No correlative evidence of costs of infection or immunity on leucocyte telomere length in a wild population of Soay sheep. Ravindran S, Underwood SL, Dorrens J, Seeker LA, Watt K, et alProc Biol Sci. 2024 Apr 10;291(2020):20232946. doi: 10.1098/rspb.2023.2946. Epub 2024 Apr 3.

A systematic analysis of the human immune response to Plasmodium vivax.Bach FA, Muñoz Sandoval D, Mazurczyk M, Themistocleous Y ...  Harding AC, et alJ Clin Invest. 2023 Oct 16;133(20):e152463. doi: 10.1172/JCI152463
Profiling the bloodstream form and procyclic form Trypanosoma brucei cell cycle using single-cell transcriptomics. Briggs EM, Marques CA, Oldrieve GR, Hu J, Otto TD, Matthews KR.Elife. 2023 May 11;12:e86325. doi: 10.7554/eLife.86325.
Mast cell ontogeny: From fetal development to life-long health and disease. Chia SL, Kapoor S, Carvalho C, Bajénoff M, Gentek R.Immunol Rev. 2023 May;315(1):31-53. doi: 10.1111/imr.13191. Epub 2023 Feb 8.
SCORPIO: a utility for defining and classifying mutation constellations of virus genomes. Colquhoun R, Jackson B, O'Toole Á, Rambaut A.Bioinformatics. 2023 Oct 3;39(10):btad575. doi: 10.1093/bioinformatics/btad575.
Unusually Divergent Ubiquitin Genes and Proteins in Plasmodium Species. Dalhuisen T, Plenderleith LJ, Ursani I, Philip N, Hahn BH, Sharp PM. Genome Biol Evol. 2023 Aug 1;15(8):evad137. doi: 10.1093/gbe/evad137. 
Viruses in Laboratory Drosophila and Their Impact on Host Gene Expression. Kuyateh O, Obbard DJ.Viruses. 2023 Aug 31;15(9):1849. doi: 10.3390/v15091849.
Defining schistosomiasis hotspots based on literature and shareholder interviews. Lim RM, Arme TM, Pedersen AB, Webster JP, Lamberton PHL.Trends Parasitol. 2023 Dec;39(12):1032-1049. doi: 10.1016/j.pt.2023.09.006. Epub 2023 Oct 6.
Trait-dependent associations between early- and late-life reproduction in a wild mammal. McKenna-Ell C, Ravindran S, Pilkington JG, Pemberton JM, Nussey DH, Froy H.Biol Lett. 2023 Jul;19(7):20230050. doi: 10.1098/rsbl.2023.0050. Epub 2023 Jul 12.
Modelling the effects of antibiotic usage in livestock on human salmonellosis. Morgan ALK, Woolhouse MEJ, Wagenaar JA, van Bunnik BAD.One Health. 2023 Oct 7;17:100639. doi: 10.1016/j.onehlt.2023.100639. eCollection 2023 Dec.
SARS-CoV-2 evolution in the Omicron era. Roemer C, Sheward DJ, Hisner R, Gueli F... O'Toole Á, et alNat Microbiol. 2023 Nov;8(11):1952-1959. doi: 10.1038/s41564-023-01504-w. Epub 2023 Oct 16.
Implementation of genomic surveillance of SARS-CoV-2 in the Caribbean: Lessons learned for sustainability in resource-limited settings. Sahadeo NSD, Nicholls S, Moreira FRR, O'Toole Á, Ramkissoon V, et alPLOS Glob Public Health. 2023 Feb 22;3(2):e0001455. doi: 10.1371/journal.pgph.0001455. eCollection 2023.
High-Level Drug-Resistant Mutations among HIV-1 Subtype A6 and CRF02_AG in Kazakhstan. Sanaubarova A, Pujol-Hodge E, Dzissyuk N, Lemey P, Vermund SH, et alViruses. 2023 Jun 21;15(7):1407. doi: 10.3390/v15071407.
Scottish Index of Multiple Deprivation (SIMD) indicators as predictors of mortality among patients hospitalised with COVID-19 disease in the Lothian Region, Scotland during the first wave: a cohort study. Scopazzini MS, Cave RNR, Mutch CP, Ross DA, Bularga A, et alInt J Equity Health. 2023 Oct 5;22(1):205. doi: 10.1186/s12939-023-02017-y.
Ancient diversity in host-parasite interaction genes in a model parasitic nematode. Stevens L, Martínez-Ugalde I, King E, Wagah M … Bancroft R, et alNat Commun. 2023 Nov 27;14(1):7776. doi: 10.1038/s41467-023-43556-w.
AIRRSHIP: simulating human B cell receptor repertoire sequences. Sutherland C, Cowan GJM.Bioinformatics. 2023 Jun 1;39(6):btad365. doi: 10.1093/bioinformatics/btad365.
Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1. Tsui JL, McCrone JT, Lambert B, Bajaj S,…  O'Toole Á, et alScience. 2023 Jul 21;381(6655):336-343. doi: 10.1126/science.adg6605. Epub 2023 Jul 20.
Special considerations for studies of extracellular vesicles from parasitic helminths: A community-led roadmap to increase rigour and reproducibility. White R, Sotillo J, Ancarola ME ... Neophytou K, et alJ Extracell Vesicles. 2023 Jan;12(1):e12298. doi: 10.1002/jev2.12298.

Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission. Aggarwal D, Page AJ, Schaefer U, Savva GM, Myers R, et alNat Commun. 2022 Feb 23;13(1):1012. doi: 10.1038/s41467-022-28371-z.
Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission. Aggarwal D, Warne B, Jahun AS, Hamilton WL, Fieldman T, et alNat Commun. 2022 Feb 8;13(1):751. doi: 10.1038/s41467-021-27942-w.
Making genomic surveillance deliver: A lineage classification and nomenclature system to inform rabies elimination. Campbell K, Gifford RJ, Singer J, Hill V, O'Toole A, et alPLoS Pathog. 2022 May 2;18(5):e1010023. doi: 10.1371/journal.ppat.1010023. eCollection 2022 May.
COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: a prospective observational cohort study. Kläser K, Molteni E, Graham M, Canas LS, et al.Sci Rep. 2022 Jun 28;12(1):10904. doi: 10.1038/s41598-022-14016-0.
Context-specific emergence and growth of the SARS-CoV-2 Delta variant. McCrone JT, Hill V, Bajaj S, Pena RE ... O'Toole Á, et alNature. 2022 Oct;610(7930):154-160. doi: 10.1038/s41586-022-05200-3. Epub 2022 Aug 11.
Controlled human malaria infection with a clone of Plasmodium vivax with high-quality genome assembly.Minassian AM, Themistocleous Y, Silk SE, Barrett JR ... Bach FA, et alJCI Insight. 2021 Dec 8;6(23):e152465. doi: 10.1172/jci.insight.152465
Genomics-informed outbreak investigations of SARS-CoV-2 using civet. O'Toole Á, Hill V, Jackson B, Dewar R, Sahadeo N, et alPLOS Glob Public Health. 2022 Dec 9;2(12):e0000704. doi: 10.1371/journal.pgph.0000704. eCollection 2022.
Pango lineage designation and assignment using SARS-CoV-2 spike gene nucleotide sequences. O'Toole Á, Pybus OG, Abram ME, Kelly EJ, Rambaut A.BMC Genomics. 2022 Feb 11;23(1):121. doi: 10.1186/s12864-022-08358-2.
The genomic basis of host and vector specificity in non-pathogenic trypanosomatids. Oldrieve GR, Malacart B, López-Vidal J, Matthews KR.Biol Open. 2022 Apr 15;11(4):bio059237. doi: 10.1242/bio.059237. Epub 2022 May 3.
Detection of HIV-1 Transmission Clusters from Dried Blood Spots within a Universal Test-and-Treat Trial in East Africa. Pujol-Hodge E, Salazar-Gonzalez JF, Ssemwanga D, Charlebois ED, Ayieko J, et alViruses. 2022 Jul 29;14(8):1673. doi: 10.3390/v14081673.
The association between female reproductive performance and leukocyte telomere length in wild Soay sheep. Ravindran S, Froy H, Underwood SL, Dorrens J, Seeker LA, et alMol Ecol. 2022 Dec;31(23):6184-6196. doi: 10.1111/mec.16175. Epub 2021 Oct 5.
Repeat controlled human malaria infection of healthy UK adults with blood-stage Plasmodium falciparum: Safety and parasite growth dynamics.Salkeld J, Themistocleous Y, Barrett JR, Mitton CH ... Bach FA, et alFront Immunol. 2022 Aug 22;13:984323. doi: 10.3389/fimmu.2022.984323
Emergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa. Tegally H, Moir M, Everatt J, Giovanetti M … O'Toole A et alNat Med. 2022 Sep;28(9):1785-1790. doi: 10.1038/s41591-022-01911-2. Epub 2022 Jun 27.
Parasite co-infection: an ecological, molecular and experimental perspective. Venter F, Matthews KR, Silvester E.Proc Biol Sci. 2022 Jan 26;289(1967):20212155. doi: 10.1098/rspb.2021.2155. Epub 2022 Jan 19.

Dermal bacterial LPS-stimulation reduces susceptibility to intradermal Trypanosoma brucei infection. Alfituri OA, Mararo EM, Steketee PC, Morrison LJ, Mabbott NA.Sci Rep. 2021 May 10;11(1):9856. doi: 10.1038/s41598-021-89053-2.
Emergence and spread of a SARS-CoV-2 lineage A variant (A.23.1) with altered spike protein in Uganda. Bugembe DL, Phan MVT, Ssewanyana I, Semanda P … O'Toole ÁN, et alNat Microbiol. 2021 Aug;6(8):1094-1101. doi: 10.1038/s41564-021-00933-9. Epub 2021 Jun 23.
Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity. Butera Y, Mukantwari E, Artesi M, Umuringa JD, O'Toole ÁN, et alNat Commun. 2021 Sep 29;12(1):5705. doi: 10.1038/s41467-021-25985-7.
Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland. da Silva Filipe A, Shepherd JG, Williams T, Hughes J ...  O'Toole Á,  et alNat Microbiol. 2021 Jan;6(1):112-122. doi: 10.1038/s41564-020-00838-z. Epub 2020 Dec 21.
Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK. du Plessis L, McCrone JT, Zarebski AE, Hill V … O'Toole Á, et alScience. 2021 Feb 12;371(6530):708-712. doi: 10.1126/science.abf2946. Epub 2021 Jan 8.
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research. Hufsky F, Lamkiewicz K, Almeida A, Aouacheria A ...   O'Toole ÁN, et alBrief Bioinform. 2021 Mar 22;22(2):642-663. doi: 10.1093/bib/bbaa232.
Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic. Jackson B, Boni MF, Bull MJ, Colleran A …  O'Toole Á, et alCell. 2021 Sep 30;184(20):5179-5188.e8. doi: 10.1016/j.cell.2021.08.014. Epub 2021 Aug 17.
Beyond phosphorylation: Putative roles of post-translational modifications in Plasmodium sexual stages. Johnson N, Philip N.Mol Biochem Parasitol. 2021 Sep;245:111406. doi: 10.1016/j.molbiopara.2021.111406. Epub 2021 Jul 27.
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence. Kraemer MUG, Hill V, Ruis C, Dellicour S, et alScience. 2021 Aug 20;373(6557):889-895. doi: 10.1126/science.abj0113. Epub 2021 Jul 22.
Mapping immune variation and var gene switching in naive hosts infected with Plasmodium falciparum. Milne K, Ivens A, Reid AJ, Lotkowska ME, O'Toole A, et alElife. 2021 Mar 2;10:e62800. doi: 10.7554/eLife.62800.
Optimizing time-limited non-pharmaceutical interventions for COVID-19 outbreak control. Morgan ALK, Woolhouse MEJ, Medley GF, van Bunnik BAD.Philos Trans R Soc Lond B Biol Sci. 2021 Jul 19;376(1829):20200282. doi: 10.1098/rstb.2020.0282. Epub 2021 May 31.
CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance. Nicholls SM, Poplawski R, Bull MJ, Underwood A … O'Toole Á, et alGenome Biol. 2021 Jul 1;22(1):196. doi: 10.1186/s13059-021-02395-y.
Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch. O'Toole Á, Hill V, Pybus OG, Watts A, Bogoch II, et alWellcome Open Res. 2021 Sep 17;6:121. doi: 10.12688/wellcomeopenres.16661.2. eCollection 2021.
Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool. O'Toole Á, Scher E, Underwood A, Jackson B, Hill V, et alVirus Evol. 2021 Jul 30;7(2):veab064. doi: 10.1093/ve/veab064. eCollection 2021.
Daily rhythms of both host and parasite affect antimalarial drug efficacy. Owolabi ATY, Reece SE, Schneider P.Evol Med Public Health. 2021 Apr 26;9(1):208-219. doi: 10.1093/emph/eoab013. eCollection 2021.
Synchrony between daily rhythms of malaria parasites and hosts is driven by an essential amino acid. Prior KF, Middleton B, Owolabi ATY, Westwood ML, Holland J, et alWellcome Open Res. 2021 Oct 20;6:186. doi: 10.12688/wellcomeopenres.16894.2. eCollection 2021.
Divergent metabolism between Trypanosoma congolense and Trypanosoma brucei results in differential sensitivity to metabolic inhibition.Steketee PC, Dickie EA, Iremonger J, Crouch K, Paxton E, et alPLoS Pathog. 2021 Jul 26;17(7):e1009734. doi: 10.1371/journal.ppat.1009734
Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity. Thomson EC, Rosen LE, Shepherd JG, Spreafico R... O'Toole A, et alCell. 2021 Mar 4;184(5):1171-1187.e20. doi: 10.1016/j.cell.2021.01.037. Epub 2021 Jan 28.
Segmentation and shielding of the most vulnerable members of the population as elements of an exit strategy from COVID-19 lockdown. van Bunnik BAD, Morgan ALK, Bessell PR, Calder-Gerver G, et al.Philos Trans R Soc Lond B Biol Sci. 2021 Jul 19;376(1829):20200275. doi: 10.1098/rstb.2020.0275. Epub 2021 May 31.
Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity. Volz E, Hill V, McCrone JT, Price A, Jorgensen D, O'Toole Á, et alCell. 2021 Jan 7;184(1):64-75.e11. doi: 10.1016/j.cell.2020.11.020. Epub 2020 Nov 19.
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England. Volz E, Mishra S, Chand M, Barrett JC ... O'Toole Á, et alNature. 2021 May;593(7858):266-269. doi: 10.1038/s41586-021-03470-x. Epub 2021 Mar 25.

Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020. Alm E, Broberg EK, Connor T, Hodcroft EB ... O'Toole Á, et alEuro Surveill. 2020 Aug;25(32):2001410. doi: 10.2807/1560-7917.ES.2020.25.32.2001410.
Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2. Lemey P, Hong SL, Hill V, Baele G … O'Toole Á,et alNat Commun. 2020 Oct 9;11(1):5110. doi: 10.1038/s41467-020-18877-9.
Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands. Oude Munnink BB, Nieuwenhuijse DF, Stein M, O'Toole Á, et alNat Med. 2020 Sep;26(9):1405-1410. doi: 10.1038/s41591-020-0997-y. Epub 2020 Jul 16.
A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology. Rambaut A, Holmes EC, O'Toole Á, Hill V, McCrone JT, et alNat Microbiol. 2020 Nov;5(11):1403-1407. doi: 10.1038/s41564-020-0770-5. Epub 2020 Jul 15.
Rapid and Sensitive Direct Detection and Identification of Poliovirus from Stool and Environmental Surveillance Samples by Use of Nanopore Sequencing. Shaw AG, Majumdar M, Troman C, O'Toole Á, Benny B, et alJ Clin Microbiol. 2020 Aug 24;58(9):e00920-20. doi: 10.1128/JCM.00920-20. Print 2020 Aug 24.
COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study. Sikkema RS, Pas SD, Nieuwenhuijse DF, O'Toole Á, et alLancet Infect Dis. 2020 Nov;20(11):1273-1280. doi: 10.1016/S1473-3099(20)30527-2. Epub 2020 Jul 2.
A Conserved TCRβ Signature Dominates a Highly Polyclonal T-Cell Expansion During the Acute Phase of a Murine Malaria Infection. Smith NL, Nahrendorf W, Sutherland C, Mooney JP, Thompson J, et alFront Immunol. 2020 Nov 23;11:587756. doi: 10.3389/fimmu.2020.587756. eCollection 2020.

African trypanosomes. Cayla M, Rojas F, Silvester E, Venter F, Matthews KR.Parasit Vectors. 2019 Apr 29;12(1):190. doi: 10.1186/s13071-019-3355-5.
Secretion of an Argonaute protein by a parasitic nematode and the evolution of its siRNA guides. Chow FW, Koutsovoulos G, Ovando-Vázquez C, Neophytou K, et alNucleic Acids Res. 2019 Apr 23;47(7):3594-3606. doi: 10.1093/nar/gkz142.
Genome annotation improvements from cross-phyla proteogenomics and time-of-day differences in malaria mosquito proteins using untargeted quantitative proteomics. Imrie L, Le Bihan T, O'Toole Á, Hickner PV, Dunn WA, et alPLoS One. 2019 Jul 29;14(7):e0220225. doi: 10.1371/journal.pone.0220225. eCollection 2019.

Evolutionary history of human Plasmodium vivax revealed by genome-wide analyses of related ape parasites. Loy DE, Plenderleith LJ, Sundararaman SA, Liu W … Morgan ALK, et alProc Natl Acad Sci U S A. 2018 Sep 4;115(36):E8450-E8459. doi: 10.1073/pnas.1810053115. Epub 2018 Aug 20.
Genetic diversity and cross-species transmission of kobuviruses in Vietnam. Lu L, Van Dung N, Ivens A, Bogaardt C, O'Toole A, et alVirus Evol. 2018 Feb 13;4(1):vey002. doi: 10.1093/ve/vey002. eCollection 2018 Jan.
Improving the annotation of the Heterorhabditis bacteriophora genomeMcLean FE, Berger D, Laetsch DR, Schwartz HT, Blaxter MGigascience . 2018 Apr 1;7(4):giy034. doi: 10.1093/gigascience/giy034

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